Both Nate and Stryfe are dead, leaving only Cable. Stryfe would never be able to hold phoenix prisoner. John, I do not know for a fact that Claremont will be Jean's regular writer. I do think at points he will get to write her.

Under Joe Quesada though, books like X-Man and Cable have been canceled. We won't see them in the main titles. Notice how the mansion got rid of all alternate timeline characters. Bishop and Rachel, if they are not killed off, will be dumped in XSE or Excalibur.